The harbour porpoise has been hunted in many areas of its range, e.g. in Puget Sound, the Bay of Fundy, Gulf of St. Lawrence, Labrador, Newfoundland, Greenland, Iceland, Black Sea, and the Danish Belt Seas. Many of these fisheries are now closed, but hunting of harbour porpoises still occurs in Greenland. In Greenland more than 700 per year were taken in 1990-1993 (Teilmann and Dietz 1995). In 2003 the reported catch had increased to 2,320 (NAMMCO 2005). Assessments of population impacts of these takes are not available.
In the Black Sea, large directed takes occurred during 1976-1983. Within that period, the total number of harbour porpoises killed was at least 163,000-211,000. Commercial hunting of Black Sea cetaceans, including harbour porpoises, was banned in 1966 in the former USSR (present Georgia, Russia and Ukraine), Bulgaria and Romania, and in 1983 in Turkey. Illegal direct killing of unknown numbers continued in some parts of the Black Sea until 1991 (Reeves and Notarbartolo di Sciara 2006).
Today, the most significant threat in most areas is incidental catches in fishing gear, primarily gill nets. Incidental mortality in fishing gear is likely to occur throughout the range of the species, but substantial incidental takes have been documented (summarized in Donovan and Bjørge 1995) for the Gulf of Maine (1,200-2,900/year), Bay of Fundy (80-400/year), West Greenland (1,400/year), North Sea (4,600/year) Celtic Shelf (1,500/year), and also off central California during the 1980s and 1990s (tens to hundreds per year; Barlow and Hanan 1995). More recent monitoring programs of Danish set-net fisheries in the North Sea revealed an average of 5,591 porpoises taken annually in the period 1987-2001 (Vinther and Larsen 2002). However, most North Sea gillnet fisheries were not monitored for marine mammal bycatch (ICES 2002).
In the Black Sea incidental mortality in bottom-set gillnets is estimated to have been in the thousands annually through the 1980s (e.g., Birkun 2002a). Almost all (>99%) of the porpoises are caught in bottom-set gillnets. The scale of this mortality almost certainly increased in recent times owing to the rapid expansion of illegal, unreported and unregulated fishing in the Black Sea.
Other types of threats include chemical pollution, vessel traffic, noise, and depletion of prey by overfishing. Due to its near shore distribution, harbour porpoises are exposed to coastal sources of pollution throughout most of its range. Chemical pollution (PCBs) has been described as having adverse effects (see Baltic subpopulation account).
An explosion at a gas-drilling platform in the Azov Sea in August 1982 resulted in the deaths of over 2,000 porpoises (Birkun 2002b).
Severe habitat degradation and prey depletion caused by intensive fishing in the Black Sea, together with explosive growth of populations of invasive species are considered important threats for local harbour porpoises (Reeves and Notarbartolo di Sciara 2006). Reduced prey availability coincided with two mass mortality events (in 1989 and 1990) that affected all three Black Sea cetacean species, but primarily harbour porpoises (Birkun 2002c). Severe pulmonary nematodosis, caused by Halocercus spp. and complicated by bacterial super-infection, was recognized as a primary cause of the deaths, which were mainly of young animals.